1 HAMP#1
304-374 aa · 71 aa · 11.8% of protein
Raw token
HAMP:304:0.0000000000947:374:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03770
Histidine kinase, Classic
Hungatella hominis · GCF_039946375
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039946375#ABLX66_RS03770Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage270 / 601 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
389-468 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:389:1.14e-29:468:80:803 HATPase_c#3
479-597 aa · 119 aa · 19.8% of protein
Raw token
HATPase_c:479:0.0000000232:597:123:109- Raw architecture: HAMP:304:0.0000000000947:374:71:69#His_kinase:389:1.14e-29:468:80:80#HATPase_c:479:0.0000000232:597:123:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039946375::NZ_JBDOJH010000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98383-101764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00025Context members
ABLX66_RS03765ABLX66_RS03770
Partner locus tags
ABLX66_RS03765ABLX66_RS03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181987944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03770Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval99 959-101 764 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 383-101 764 ntGCF_039946375::NZ_JBDOJH010000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span98 383-101 764 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 383 nt101 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABLX66_RS03765GCF_039946375#ABLX66_RS03765
RRunclassified
98 383-99 966 nt · Reverse (-)
ABLX66_RS03770GCF_039946375#ABLX66_RS03770
HKClassicCurrent focus
99 959-101 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1048732
Simplified PFAM architecture for HKOC_1048732
PFAM domain coverage: 244 / 601 aa (40.6%)
1 aa601 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[322-374] | His_kinase[389-467] | HATPase_c[485-596]
- Domain count: 3
- Matched identifier: HKOC_1048732
- Positioned domains: HAMP 322-374 ; His_kinase 389-467 ; HATPase_c 485-596
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key