1 Response_reg#1
4-117 aa · 114 aa · 21.6% of protein
Raw token
Response_reg:4:4.14e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03765
Response regulator, unclassified
Hungatella hominis · GCF_039946375
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039946375#ABLX66_RS03765Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 527 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
480-517 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:480:0.0000847:517:38:42- Raw architecture: Response_reg:4:4.14e-28:117:114:111#HTH_AraC:480:0.0000847:517:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039946375::NZ_JBDOJH010000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98383-101764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000003.1::G00025Context members
ABLX66_RS03765ABLX66_RS03770
Partner locus tags
ABLX66_RS03765ABLX66_RS03770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631948.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P507Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P507_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03765Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000003.1Sequence record reported by the local genomic context database.
Genomic interval98 383-99 966 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 383-101 764 ntGCF_039946375::NZ_JBDOJH010000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000003.1All displayed genes belong to this local TCS context.
Neighborhood span98 383-101 764 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 383 nt101 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABLX66_RS03765GCF_039946375#ABLX66_RS03765
RRunclassifiedCurrent focus
98 383-99 966 nt · Reverse (-)
ABLX66_RS03770GCF_039946375#ABLX66_RS03770
HKClassic
99 959-101 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116252
Simplified PFAM architecture for RROC_0116252
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[441-518]
- Domain count: 2
- Matched identifier: RROC_0116252
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 441-518 ; HTH_18 441-518
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key