1 HAMP#1
293-364 aa · 72 aa · 12.3% of protein
Raw token
HAMP:293:0.00000000362:364:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABLX66_RS03140
Histidine kinase, Classic
Hungatella hominis · GCF_039946375
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039946375#ABLX66_RS03140Stable P2CS identifier used across views.
GenomeGCF_039946375Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 584 aa (43.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation3 items
2 His_kinase#2
381-458 aa · 78 aa · 13.4% of protein
Raw token
His_kinase:381:5.95e-32:458:79:803 HATPase_c#3
476-579 aa · 104 aa · 17.8% of protein
Raw token
HATPase_c:476:0.00000000000000996:579:109:109- Raw architecture: HAMP:293:0.00000000362:364:72:69#His_kinase:381:5.95e-32:458:79:80#HATPase_c:476:0.00000000000000996:579:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039946375::NZ_JBDOJH010000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span327255-330520Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039946375::NZ_JBDOJH010000002.1::G00023Context members
ABLX66_RS03135ABLX66_RS03140
Partner locus tags
ABLX66_RS03135ABLX66_RS03140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633218.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NWV6Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NWV6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABLX66_RS03140Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDOJH010000002.1Sequence record reported by the local genomic context database.
Genomic interval328 766-330 520 nt1 755 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span327 255-330 520 ntGCF_039946375::NZ_JBDOJH010000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039946375::NZ_JBDOJH010000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOJH010000002.1All displayed genes belong to this local TCS context.
Neighborhood span327 255-330 520 nt3 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
327 255 nt330 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABLX66_RS03135GCF_039946375#ABLX66_RS03135
RRunclassified
327 255-328 763 nt · Reverse (-)
ABLX66_RS03140GCF_039946375#ABLX66_RS03140
HKClassicCurrent focus
328 766-330 520 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS27830Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1143273
Simplified PFAM architecture for HKOC_1143273
PFAM domain coverage: 236 / 584 aa (40.4%)
1 aa584 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-364] | His_kinase[382-458] | HATPase_c[476-580]
- Domain count: 3
- Matched identifier: HKOC_1143273
- Positioned domains: HAMP 311-364 ; His_kinase 382-458 ; HATPase_c 476-580
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS27830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 050 · GCF_039946375
AssemblyASM3994637v1 · Scaffoldhaploid
Genome composition7 382 838 bp · 49,0% GCHungatella hominis
Signal transduction countsGenes 274 · HK 137 · RR 134CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key