1 Response_reg#1
47-116 aa · 70 aa · 32.0% of protein
Raw token
Response_reg:47:6.82e-21:116:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABJB24_RS06575
Response regulator NarL family
Bifidobacterium breve · GCF_039912975
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039912975#ABJB24_RS06575Stable P2CS identifier used across views.
GenomeGCF_039912975Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage125 / 219 aa (57.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-210 aa · 55 aa · 25.1% of protein
Raw token
HTH_LUXR:156:0.00000000000000107:210:56:58- Raw architecture: Response_reg:47:6.82e-21:116:70:111#HTH_LUXR:156:0.00000000000000107:210:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039912975::NZ_JBDOTO010000005.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71718-72377Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABJB24_06575RefSeq proteinWP_271723727.1
Context group ID
GCF_039912975::NZ_JBDOTO010000005.1::G00010Context members
ABJB24_RS06575
Partner locus tags
ABJB24_RS06575
Partner old locus tags
ABJB24_06575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271723727.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABJB24_RS06575Primary locus identifier stored in the genes table.
Old locus tagABJB24_06575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOTO010000005.1Sequence record reported by the local genomic context database.
Genomic interval71 718-72 377 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 718-72 377 ntGCF_039912975::NZ_JBDOTO010000005.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039912975::NZ_JBDOTO010000005.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOTO010000005.1All displayed genes belong to this local TCS context.
Neighborhood span71 718-72 377 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 718 nt72 377 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABJB24_RS06575GCF_039912975#ABJB24_RS06575
RRNarLCurrent focus
71 718-72 377 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902167575#FPG44_RS01070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0652799
Simplified PFAM architecture for RROC_0652799
PFAM domain coverage: 121 / 261 aa (46.4%)
1 aa261 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[89-158] | GerE[199-249]
- Domain count: 2
- Matched identifier: RROC_0652799
- Positioned domains: Response_reg 89-158 ; GerE 199-249
Cluster members and taxonomy
Representative gene: GCF_902167575#FPG44_RS01070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_039912975
AssemblyASM3991297v1 · Scaffoldhaploid
Genome composition2 383 681 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 23 · HK 9 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key