1 Response_reg#1
4-112 aa · 109 aa · 69.4% of protein
Raw token
Response_reg:4:5.32e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABJB08_RS01100
Response regulator, CheY family
Bifidobacterium catenulatum · GCF_039912925
ClassRRTypeCheYLength157 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039912925#ABJB08_RS01100Stable P2CS identifier used across views.
GenomeGCF_039912925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length157 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 157 aa (69.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa157 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.32e-31:112:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039912925::NZ_JBDOTL010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span187267-187737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABJB08_01110RefSeq proteinWP_347910391.1
Context group ID
GCF_039912925::NZ_JBDOTL010000001.1::G00004Context members
ABJB08_RS01100
Partner locus tags
ABJB08_RS01100
Partner old locus tags
ABJB08_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347910391.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABJB08_RS01100Primary locus identifier stored in the genes table.
Old locus tagABJB08_01110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOTL010000001.1Sequence record reported by the local genomic context database.
Genomic interval187 267-187 737 nt471 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span187 267-187 737 ntGCF_039912925::NZ_JBDOTL010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039912925::NZ_JBDOTL010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOTL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span187 267-187 737 nt471 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 267 nt187 737 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABJB08_RS01100GCF_039912925#ABJB08_RS01100
RRCheYCurrent focus
187 267-187 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468085#DW899_RS09450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732452
Simplified PFAM architecture for RROC_1732452
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1732452
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_003468085#DW899_RS09450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039912925
AssemblyASM3991292v1 · Scaffoldhaploid
Genome composition2 173 474 bp · 56,5% GCBifidobacterium catenulatum
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key