1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000382:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABJB20_RS01335
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_039912905
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039912905#ABJB20_RS01335Stable P2CS identifier used across views.
GenomeGCF_039912905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:8.27e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000382:249:66:64#HATPase_c:312:8.27e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039912905::NZ_JBDOTN010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span353549-355682Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABJB20_01335RefSeq proteinWP_099570989.1
Context group ID
GCF_039912905::NZ_JBDOTN010000001.1::G00002Context members
ABJB20_RS01335ABJB20_RS01340
Partner locus tags
ABJB20_RS01335ABJB20_RS01340
Partner old locus tags
ABJB20_01335ABJB20_01340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_099570989.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C6V9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C6V9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABJB20_RS01335Primary locus identifier stored in the genes table.
Old locus tagABJB20_01335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOTN010000001.1Sequence record reported by the local genomic context database.
Genomic interval353 549-354 895 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span353 549-355 682 ntGCF_039912905::NZ_JBDOTN010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039912905::NZ_JBDOTN010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOTN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span353 549-355 682 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
353 549 nt355 682 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABJB20_RS01335GCF_039912905#ABJB20_RS01335
HKClassicCurrent focus
353 549-354 895 nt · Forward (+)
ABJB20_RS01340GCF_039912905#ABJB20_RS01340
RROmpR
354 978-355 682 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS02660Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990104
Simplified PFAM architecture for HKOC_1990104
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1990104
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS02660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039912905
AssemblyASM3991290v1 · Scaffoldhaploid
Genome composition2 029 039 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key