1 Response_reg#1
9-119 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:9:7.89e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABG935_RS00410
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_039835995
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039835995#ABG935_RS00410Stable P2CS identifier used across views.
GenomeGCF_039835995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 243 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.4% of protein
Raw token
Trans_reg_C:153:6.48e-29:238:86:77- Raw architecture: Response_reg:9:7.89e-37:119:111:111#Trans_reg_C:153:6.48e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039835995::NZ_JBDOYS010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101003-103577Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABG935_00415RefSeq proteinWP_003836535.1
Context group ID
GCF_039835995::NZ_JBDOYS010000001.1::G00005Context members
ABG935_RS00405ABG935_RS00410
Partner locus tags
ABG935_RS00405ABG935_RS00410
Partner old locus tags
ABG935_00410ABG935_00415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003836535.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1CA86Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1CA86_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABG935_RS00410Primary locus identifier stored in the genes table.
Old locus tagABG935_00415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOYS010000001.1Sequence record reported by the local genomic context database.
Genomic interval102 846-103 577 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 003-103 577 ntGCF_039835995::NZ_JBDOYS010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039835995::NZ_JBDOYS010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOYS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span101 003-103 577 nt2 575 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 003 nt103 577 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABG935_RS00405GCF_039835995#ABG935_RS00405
HKClassic
101 003-102 832 nt · Reverse (-)
ABG935_RS00410GCF_039835995#ABG935_RS00410
RROmpRCurrent focus
102 846-103 577 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS07985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824861
Simplified PFAM architecture for RROC_0824861
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0824861
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 153-237 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS07985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039835995
AssemblyASM3983599v1 · Scaffoldhaploid
Genome composition2 072 591 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 29 · HK 11 · RR 14CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key