1 HisKA#1
190-255 aa · 66 aa · 14.5% of protein
Raw token
HisKA:190:0.00000000000633:255:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABG934_RS00970
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_039835915
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039835915#ABG934_RS00970Stable P2CS identifier used across views.
GenomeGCF_039835915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 454 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-430 aa · 113 aa · 24.9% of protein
Raw token
HATPase_c:318:1.11e-29:430:113:109- Raw architecture: HisKA:190:0.00000000000633:255:66:64#HATPase_c:318:1.11e-29:430:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039835915::NZ_JBDOYN010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span238168-240301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABG934_00970RefSeq proteinWP_271727235.1
Context group ID
GCF_039835915::NZ_JBDOYN010000001.1::G00004Context members
ABG934_RS00970ABG934_RS00975
Partner locus tags
ABG934_RS00970ABG934_RS00975
Partner old locus tags
ABG934_00970ABG934_00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271727235.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABG934_RS00970Primary locus identifier stored in the genes table.
Old locus tagABG934_00970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval238 168-239 532 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span238 168-240 301 ntGCF_039835915::NZ_JBDOYN010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039835915::NZ_JBDOYN010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span238 168-240 301 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 168 nt240 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABG934_RS00970GCF_039835915#ABG934_RS00970
HKClassicCurrent focus
238 168-239 532 nt · Forward (+)
ABG934_RS00975GCF_039835915#ABG934_RS00975
RROmpR
239 597-240 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028316405#PMS68_RS02935Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1919743
Simplified PFAM architecture for HKOC_1919743
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-255] | HATPase_c[319-429]
- Domain count: 2
- Matched identifier: HKOC_1919743
- Positioned domains: HisKA 190-255 ; HATPase_c 319-429
Cluster members and taxonomy
Representative gene: GCF_028316405#PMS68_RS02935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039835915
AssemblyASM3983591v1 · Scaffoldhaploid
Genome composition2 070 404 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 29 · HK 11 · RR 14CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key