1 Response_reg#1
48-161 aa · 114 aa · 45.1% of protein
Raw token
Response_reg:48:7.29e-16:161:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABG943_RS04615
Response regulator NarL family
Bifidobacterium catenulatum · GCF_039835875
ClassRRTypeNarLLength253 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039835875#ABG943_RS04615Stable P2CS identifier used across views.
GenomeGCF_039835875Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 253 aa (67.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
190-246 aa · 57 aa · 22.5% of protein
Raw token
HTH_LUXR:190:6.45e-19:246:57:58- Raw architecture: Response_reg:48:7.29e-16:161:115:111#HTH_LUXR:190:6.45e-19:246:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039835875::NZ_JBDOYM010000003.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span195847-196608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABG943_04600RefSeq proteinWP_347452493.1
Context group ID
GCF_039835875::NZ_JBDOYM010000003.1::G00008Context members
ABG943_RS04615
Partner locus tags
ABG943_RS04615
Partner old locus tags
ABG943_04600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347452493.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABG943_RS04615Primary locus identifier stored in the genes table.
Old locus tagABG943_04600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOYM010000003.1Sequence record reported by the local genomic context database.
Genomic interval195 847-196 608 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span195 847-196 608 ntGCF_039835875::NZ_JBDOYM010000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039835875::NZ_JBDOYM010000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOYM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span195 847-196 608 nt762 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
195 847 nt196 608 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABG943_RS04615GCF_039835875#ABG943_RS04615
RRNarLCurrent focus
195 847-196 608 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040921525#AB5478_RS03315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0685898
Simplified PFAM architecture for RROC_0685898
PFAM domain coverage: 167 / 255 aa (65.5%)
1 aa255 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[50-162] | GerE[194-247]
- Domain count: 2
- Matched identifier: RROC_0685898
- Positioned domains: Response_reg 50-162 ; GerE 194-247
Cluster members and taxonomy
Representative gene: GCF_040921525#AB5478_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039835875
AssemblyASM3983587v1 · Scaffoldhaploid
Genome composition2 082 571 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key