1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000469:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABG879_RS08610
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_039834645
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039834645#ABG879_RS08610Stable P2CS identifier used across views.
GenomeGCF_039834645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 448 aa (39.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-421 aa · 110 aa · 24.6% of protein
Raw token
HATPase_c:312:2.91e-29:421:110:109- Raw architecture: HisKA:184:0.00000000000469:249:66:64#HATPase_c:312:2.91e-29:421:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039834645::NZ_JBDOWD010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20372-22505Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABG879_08625RefSeq proteinWP_003836076.1
Context group ID
GCF_039834645::NZ_JBDOWD010000010.1::G00001Context members
ABG879_RS08610ABG879_RS08615
Partner locus tags
ABG879_RS08610ABG879_RS08615
Partner old locus tags
ABG879_08625ABG879_08630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003836076.1Primary protein accession used for annex mappings.
UniProt accessionB6XWE5Primary UniProt accession resolved in the annex database.
UniProt IDB6XWE5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABG879_RS08610Primary locus identifier stored in the genes table.
Old locus tagABG879_08625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDOWD010000010.1Sequence record reported by the local genomic context database.
Genomic interval20 372-21 718 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 372-22 505 ntGCF_039834645::NZ_JBDOWD010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039834645::NZ_JBDOWD010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDOWD010000010.1All displayed genes belong to this local TCS context.
Neighborhood span20 372-22 505 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 372 nt22 505 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABG879_RS08610GCF_039834645#ABG879_RS08610
HKClassicCurrent focus
20 372-21 718 nt · Forward (+)
ABG879_RS08615GCF_039834645#ABG879_RS08615
RROmpR
21 801-22 505 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS06810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1987848
Simplified PFAM architecture for HKOC_1987848
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1987848
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS06810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_039834645
AssemblyASM3983464v1 · Scaffoldhaploid
Genome composition2 232 494 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key