1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:4.67e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHV36_RS07005
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_039760095
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039760095#ABHV36_RS07005Stable P2CS identifier used across views.
GenomeGCF_039760095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:151:7.3e-28:225:75:77- Raw architecture: Response_reg:3:4.67e-34:112:111:111#Trans_reg_C:151:7.3e-28:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039760095::NZ_JBDMUZ010000039.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24455-28007Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039760095::NZ_JBDMUZ010000039.1::G00012Context members
ABHV36_RS07000ABHV36_RS07005
Partner locus tags
ABHV36_RS07000ABHV36_RS07005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195422779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHV36_RS07005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMUZ010000039.1Sequence record reported by the local genomic context database.
Genomic interval27 303-28 007 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 455-28 007 ntGCF_039760095::NZ_JBDMUZ010000039.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039760095::NZ_JBDMUZ010000039.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMUZ010000039.1All displayed genes belong to this local TCS context.
Neighborhood span24 455-28 007 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 455 nt28 007 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHV36_RS07000GCF_039760095#ABHV36_RS07000
HKClassic
24 455-27 298 nt · Forward (+)
ABHV36_RS07005GCF_039760095#ABHV36_RS07005
RROmpRCurrent focus
27 303-28 007 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015554265#I2E39_RS06950Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1061238
Simplified PFAM architecture for RROC_1061238
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1061238
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_015554265#I2E39_RS06950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_039760095
AssemblyASM3976009v1 · Contighaploid
Genome composition2 169 011 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 29 · HK 13 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key