1 Response_reg#1
18-119 aa · 102 aa · 50.7% of protein
Raw token
Response_reg:18:0.00000000000403:119:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHV03_RS00580
Response regulator, unclassified
Bifidobacterium longum · GCF_039759295
ClassRRTypeunclassifiedLength201 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039759295#ABHV03_RS00580Stable P2CS identifier used across views.
GenomeGCF_039759295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length201 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 201 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:18:0.00000000000403:119:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039759295::NZ_JBDMTJ010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span125042-125647Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039759295::NZ_JBDMTJ010000001.1::G00002Context members
ABHV03_RS00580
Partner locus tags
ABHV03_RS00580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138266987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHV03_RS00580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMTJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval125 042-125 647 nt606 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span125 042-125 647 ntGCF_039759295::NZ_JBDMTJ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039759295::NZ_JBDMTJ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMTJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span125 042-125 647 nt606 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 042 nt125 647 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHV03_RS00580GCF_039759295#ABHV03_RS00580
RRunclassifiedCurrent focus
125 042-125 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039759395#ABHU99_RS01805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2078498
Simplified PFAM architecture for RROC_2078498
PFAM domain coverage: 112 / 207 aa (54.1%)
1 aa207 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[24-135]
- Domain count: 1
- Matched identifier: RROC_2078498
- Positioned domains: Response_reg 24-135
Cluster members and taxonomy
Representative gene: GCF_039759395#ABHU99_RS01805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_039759295
AssemblyASM3975929v1 · Scaffoldhaploid
Genome composition2 472 922 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key