1 HisKA#1
151-216 aa · 66 aa · 15.9% of protein
Raw token
HisKA:151:0.00000000000415:216:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS32_RS09300
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_039754435
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039754435#ABHS32_RS09300Stable P2CS identifier used across views.
GenomeGCF_039754435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 415 aa (42.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
279-388 aa · 110 aa · 26.5% of protein
Raw token
HATPase_c:279:1.1e-29:388:110:109- Raw architecture: HisKA:151:0.00000000000415:216:66:64#HATPase_c:279:1.1e-29:388:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039754435::NZ_JBDMJZ010000085.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2036Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039754435::NZ_JBDMJZ010000085.1::G00010Context members
ABHS32_RS09300ABHS32_RS09305
Partner locus tags
ABHS32_RS09300ABHS32_RS09305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347015221.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS32_RS09300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMJZ010000085.1Sequence record reported by the local genomic context database.
Genomic interval1-1 249 nt1 249 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 036 ntGCF_039754435::NZ_JBDMJZ010000085.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039754435::NZ_JBDMJZ010000085.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMJZ010000085.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 036 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHS32_RS09300GCF_039754435#ABHS32_RS09300
HKClassicCurrent focus
1-1 249 nt · Forward (+)
ABHS32_RS09305GCF_039754435#ABHS32_RS09305
RROmpR
1 332-2 036 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS06810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1987848
Simplified PFAM architecture for HKOC_1987848
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1987848
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS06810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039754435
AssemblyASM3975443v1 · Scaffoldhaploid
Genome composition2 067 843 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key