1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:0.00000000000000136:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS57_RS04935
Response regulator NarL family
Bifidobacterium catenulatum · GCF_039754395
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039754395#ABHS57_RS04935Stable P2CS identifier used across views.
GenomeGCF_039754395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 218 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:155:1.07e-18:211:57:58- Raw architecture: Response_reg:13:0.00000000000000136:126:115:111#HTH_LUXR:155:1.07e-18:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039754395::NZ_JBDMKA010000009.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span40736-41392Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039754395::NZ_JBDMKA010000009.1::G00005Context members
ABHS57_RS04935
Partner locus tags
ABHS57_RS04935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331868502.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS57_RS04935Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMKA010000009.1Sequence record reported by the local genomic context database.
Genomic interval40 736-41 392 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 736-41 392 ntGCF_039754395::NZ_JBDMKA010000009.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039754395::NZ_JBDMKA010000009.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMKA010000009.1All displayed genes belong to this local TCS context.
Neighborhood span40 736-41 392 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 736 nt41 392 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHS57_RS04935GCF_039754395#ABHS57_RS04935
RRNarLCurrent focus
40 736-41 392 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039754355#ABHS36_RS06000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1835906
Simplified PFAM architecture for RROC_1835906
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1835906
- Positioned domains: Response_reg 13-125 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_039754355#ABHS36_RS06000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039754395
AssemblyASM3975439v1 · Scaffoldhaploid
Genome composition2 069 597 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key