1 Response_reg#1
8-108 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:8:1.1e-19:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS36_RS08645
Response regulator LytTR family
Bifidobacterium catenulatum · GCF_039754355
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039754355#ABHS36_RS08645Stable P2CS identifier used across views.
GenomeGCF_039754355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 238 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:8.64e-21:230:97:98- Raw architecture: Response_reg:8:1.1e-19:108:106:111#LytTR:139:8.64e-21:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039754355::NZ_JBDMJY010000034.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5131-5847Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039754355::NZ_JBDMJY010000034.1::G00010Context members
ABHS36_RS08645
Partner locus tags
ABHS36_RS08645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033513035.1Primary protein accession used for annex mappings.
UniProt accessionA0ABM7EXN6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABM7EXN6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS36_RS08645Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMJY010000034.1Sequence record reported by the local genomic context database.
Genomic interval5 131-5 847 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 131-5 847 ntGCF_039754355::NZ_JBDMJY010000034.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039754355::NZ_JBDMJY010000034.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMJY010000034.1All displayed genes belong to this local TCS context.
Neighborhood span5 131-5 847 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 131 nt5 847 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHS36_RS08645GCF_039754355#ABHS36_RS08645
RRLytTRCurrent focus
5 131-5 847 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS06080Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932698
Simplified PFAM architecture for RROC_0932698
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0932698
- Positioned domains: Response_reg 7-109 ; Response_reg 7-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS06080
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 43 over 43 total members. Page 1 / 1.
GCF_000173455#BIFCAT_RS06080 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_039754355
AssemblyASM3975435v1 · Scaffoldhaploid
Genome composition2 072 636 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 19 · HK 9 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key