1 Response_reg#1
1-67 aa · 67 aa · 38.5% of protein
Raw token
Response_reg:1:0.000000774:67:67:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHS46_RS03445
Response regulator NarL family
Bifidobacterium longum · GCF_039754215
ClassRRTypeNarLLength174 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039754215#ABHS46_RS03445Stable P2CS identifier used across views.
GenomeGCF_039754215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length174 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage125 / 174 aa (71.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
111-168 aa · 58 aa · 33.3% of protein
Raw token
HTH_LUXR:111:6.63e-27:168:58:58- Raw architecture: Response_reg:1:0.000000774:67:67:111#HTH_LUXR:111:6.63e-27:168:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039754215::NZ_JBDMJQ010000008.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42232-42756Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039754215::NZ_JBDMJQ010000008.1::G00004Context members
ABHS46_RS03445
Partner locus tags
ABHS46_RS03445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347046154.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHS46_RS03445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMJQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval42 232-42 756 nt525 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 232-42 756 ntGCF_039754215::NZ_JBDMJQ010000008.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039754215::NZ_JBDMJQ010000008.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMJQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span42 232-42 756 nt525 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 232 nt42 756 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHS46_RS03445GCF_039754215#ABHS46_RS03445
RRNarLCurrent focus
42 232-42 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000185665#HMPREF0177_RS07090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120003
Simplified PFAM architecture for RROC_1120003
PFAM domain coverage: 169 / 232 aa (72.8%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1120003
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_000185665#HMPREF0177_RS07090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_039754215
AssemblyASM3975421v1 · Scaffoldhaploid
Genome composition2 294 477 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 9 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key