1 HAMP#1
119-190 aa · 72 aa · 16.9% of protein
Raw token
HAMP:119:0.000000435:190:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHR09_RS00300
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_039750715
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039750715#ABHR09_RS00300Stable P2CS identifier used across views.
GenomeGCF_039750715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 425 aa (56.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HisKA#2
201-260 aa · 60 aa · 14.1% of protein
Raw token
HisKA:201:0.000000181:260:60:643 HATPase_c#3
312-419 aa · 108 aa · 25.4% of protein
Raw token
HATPase_c:312:2.21e-17:419:108:109- Raw architecture: HAMP:119:0.000000435:190:72:69#HisKA:201:0.000000181:260:60:64#HATPase_c:312:2.21e-17:419:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039750715::NZ_JBDMCZ010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59938-61958Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039750715::NZ_JBDMCZ010000001.1::G00001Context members
ABHR09_RS00295ABHR09_RS00300
Partner locus tags
ABHR09_RS00295ABHR09_RS00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347126186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHR09_RS00300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMCZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval60 681-61 958 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 938-61 958 ntGCF_039750715::NZ_JBDMCZ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039750715::NZ_JBDMCZ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMCZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span59 938-61 958 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 938 nt61 958 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHR09_RS00295GCF_039750715#ABHR09_RS00295
RROmpR
59 938-60 597 nt · Forward (+)
ABHR09_RS00300GCF_039750715#ABHR09_RS00300
HKClassicCurrent focus
60 681-61 958 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039750695#ABHQ97_RS00570Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2221632
Simplified PFAM architecture for HKOC_2221632
PFAM domain coverage: 161 / 425 aa (37.9%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[202-254] | HATPase_c[313-420]
- Domain count: 2
- Matched identifier: HKOC_2221632
- Positioned domains: HisKA 202-254 ; HATPase_c 313-420
Cluster members and taxonomy
Representative gene: GCF_039750695#ABHQ97_RS00570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_039750715
AssemblyASM3975071v1 · Contighaploid
Genome composition3 254 425 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key