1 HisKA_3#1
244-302 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:244:7.06e-16:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHM14_RS04865
Histidine kinase, Classic
Bifidobacterium longum · GCF_039733685
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039733685#ABHM14_RS04865Stable P2CS identifier used across views.
GenomeGCF_039733685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 819 aa (27.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.5% of protein
Raw token
HATPase_c:345:0.000000000000473:438:110:1093 HisKA_3#3
695-765 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:695:0.0000103:765:71:68- Raw architecture: HisKA_3:244:7.06e-16:302:59:68#HATPase_c:345:0.000000000000473:438:110:109#HisKA_3:695:0.0000103:765:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039733685::NZ_JBDMJS010000007.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70239-73625Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039733685::NZ_JBDMJS010000007.1::G00007Context members
ABHM14_RS04860ABHM14_RS04865
Partner locus tags
ABHM14_RS04860ABHM14_RS04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347013869.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHM14_RS04865Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMJS010000007.1Sequence record reported by the local genomic context database.
Genomic interval71 166-73 625 nt2 460 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 239-73 625 ntGCF_039733685::NZ_JBDMJS010000007.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039733685::NZ_JBDMJS010000007.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMJS010000007.1All displayed genes belong to this local TCS context.
Neighborhood span70 239-73 625 nt3 387 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 239 nt73 625 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHM14_RS04860GCF_039733685#ABHM14_RS04860
RRNarL
70 239-71 144 nt · Reverse (-)
ABHM14_RS04865GCF_039733685#ABHM14_RS04865
HKClassicCurrent focus
71 166-73 625 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039733685#ABHM14_RS04865The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0531517
Simplified PFAM architecture for HKOC_0531517
PFAM domain coverage: 411 / 819 aa (50.2%)
1 aa819 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-614]
- Domain count: 4
- Matched identifier: HKOC_0531517
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-614
Cluster members and taxonomy
Representative gene: GCF_039733685#ABHM14_RS04865
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_039733685#ABHM14_RS04865 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_039733685
AssemblyASM3973368v1 · Scaffoldhaploid
Genome composition2 536 260 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 17 · HK 9 · RR 8CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key