1 HAMP#1
18-88 aa · 71 aa · 22.3% of protein
Raw token
HAMP:18:1.64e-18:88:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHM30_RS06370
Histidine kinase, Classic
Bifidobacterium longum · GCF_039733665
ClassHKTypeClassicLength318 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039733665#ABHM30_RS06370Stable P2CS identifier used across views.
GenomeGCF_039733665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length318 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 318 aa (77.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa318 aa
Domain-by-domain annotation3 items
2 HisKA#2
92-156 aa · 65 aa · 20.4% of protein
Raw token
HisKA:92:8.87e-17:156:65:643 HATPase_c#3
201-311 aa · 111 aa · 34.9% of protein
Raw token
HATPase_c:201:1.89e-21:311:112:109- Raw architecture: HAMP:18:1.64e-18:88:71:69#HisKA:92:8.87e-17:156:65:64#HATPase_c:201:1.89e-21:311:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039733665::NZ_JBDMJO010000038.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span20549-21507Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039733665::NZ_JBDMJO010000038.1::G00010Context members
ABHM30_RS06370
Partner locus tags
ABHM30_RS06370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347013018.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHM30_RS06370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMJO010000038.1Sequence record reported by the local genomic context database.
Genomic interval20 549-21 507 nt959 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 549-21 507 ntGCF_039733665::NZ_JBDMJO010000038.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039733665::NZ_JBDMJO010000038.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMJO010000038.1All displayed genes belong to this local TCS context.
Neighborhood span20 549-21 507 nt959 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 549 nt21 507 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABHM30_RS06370GCF_039733665#ABHM30_RS06370
HKClassicCurrent focus
20 549-21 507 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2764997
Simplified PFAM architecture for HKOC_2764997
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2764997
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_039733665
AssemblyASM3973366v1 · Scaffoldhaploid
Genome composition2 288 560 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key