1 HAMP#1
291-360 aa · 70 aa · 11.8% of protein
Raw token
HAMP:291:0.000000000485:360:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABHM79_RS15255
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_039733325
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039733325#ABHM79_RS15255Stable P2CS identifier used across views.
GenomeGCF_039733325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 593 aa (42.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:382:4.58e-29:461:80:803 HATPase_c#3
487-587 aa · 101 aa · 17.0% of protein
Raw token
HATPase_c:487:0.000000653:587:101:109- Raw architecture: HAMP:291:0.000000000485:360:70:69#His_kinase:382:4.58e-29:461:80:80#HATPase_c:487:0.000000653:587:101:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039733325::NZ_JBDMDA010000051.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8950-12359Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039733325::NZ_JBDMDA010000051.1::G00039Context members
ABHM79_RS15250ABHM79_RS15255
Partner locus tags
ABHM79_RS15250ABHM79_RS15255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347126436.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABHM79_RS15255Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBDMDA010000051.1Sequence record reported by the local genomic context database.
Genomic interval10 577-12 359 nt1 783 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 950-12 359 ntGCF_039733325::NZ_JBDMDA010000051.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039733325::NZ_JBDMDA010000051.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDMDA010000051.1All displayed genes belong to this local TCS context.
Neighborhood span8 950-12 359 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 950 nt12 359 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABHM79_RS15250GCF_039733325#ABHM79_RS15250
RRunclassified
8 950-10 572 nt · Reverse (-)
ABHM79_RS15255GCF_039733325#ABHM79_RS15255
HKClassicCurrent focus
10 577-12 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040908985#AB5Z07_RS15615Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1091684
Simplified PFAM architecture for HKOC_1091684
PFAM domain coverage: 80 / 594 aa (13.5%)
1 aa594 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[383-462]
- Domain count: 1
- Matched identifier: HKOC_1091684
- Positioned domains: His_kinase 383-462
Cluster members and taxonomy
Representative gene: GCF_040908985#AB5Z07_RS15615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_039733325
AssemblyASM3973332v1 · Scaffoldhaploid
Genome composition3 260 063 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key