1 HAMP#1
179-242 aa · 64 aa · 10.6% of protein
Raw token
HAMP:179:2.56e-16:242:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K7S22_RS01620
Histidine kinase, Classic
Enterococcus faecalis · GCF_039684255
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039684255#K7S22_RS01620Stable P2CS identifier used across views.
GenomeGCF_039684255Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage352 / 602 aa (58.5%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation4 items
2 PAS#2
252-359 aa · 108 aa · 17.9% of protein
Raw token
PAS:252:0.0000000000875:359:115:1133 HisKA#3
368-435 aa · 68 aa · 11.3% of protein
Raw token
HisKA:368:3.16e-19:435:68:644 HATPase_c#4
484-595 aa · 112 aa · 18.6% of protein
Raw token
HATPase_c:484:3.6e-33:595:112:109- Raw architecture: HAMP:179:2.56e-16:242:64:69#PAS:252:0.0000000000875:359:115:113#HisKA:368:3.16e-19:435:68:64#HATPase_c:484:3.6e-33:595:112:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039684255::NZ_JBDKWJ010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span320221-322740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK7S22_01620RefSeq proteinWP_346721886.1
Context group ID
GCF_039684255::NZ_JBDKWJ010000001.1::G00004Context members
K7S22_RS01620K7S22_RS01625
Partner locus tags
K7S22_RS01620K7S22_RS01625
Partner old locus tags
K7S22_01620K7S22_01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_346721886.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK7S22_RS01620Primary locus identifier stored in the genes table.
Old locus tagK7S22_01620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBDKWJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval320 221-322 029 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span320 221-322 740 ntGCF_039684255::NZ_JBDKWJ010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039684255::NZ_JBDKWJ010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBDKWJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span320 221-322 740 nt2 520 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
320 221 nt322 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K7S22_RS01620GCF_039684255#K7S22_RS01620
HKClassicCurrent focus
320 221-322 029 nt · Reverse (-)
K7S22_RS01625GCF_039684255#K7S22_RS01625
RROmpR
322 036-322 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039684255#K7S22_RS01620The current gene is the representative for this cluster.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1046342
Simplified PFAM architecture for HKOC_1046342
PFAM domain coverage: 424 / 602 aa (70.4%)
1 aa602 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[79-164] | HAMP[190-242] | PAS[253-359] | HisKA[369-435] | HATPase_c[484-594]
- Domain count: 5
- Matched identifier: HKOC_1046342
- Positioned domains: Cache_WalK 79-164 ; HAMP 190-242 ; PAS 253-359 ; HisKA 369-435 ; HATPase_c 484-594
Cluster members and taxonomy
Representative gene: GCF_039684255#K7S22_RS01620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_039684255
AssemblyASM3968425v1 · Contighaploid
Genome composition3 295 602 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key