1 HisKA#1
104-169 aa · 66 aa · 17.3% of protein
Raw token
HisKA:104:0.00000000000344:169:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCM64_RS01240
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_039063605
ClassHKTypeClassicLength381 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039063605#ABCM64_RS01240Stable P2CS identifier used across views.
GenomeGCF_039063605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length381 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 381 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa381 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-344 aa · 110 aa · 28.9% of protein
Raw token
HATPase_c:235:3.56e-29:344:110:109- Raw architecture: HisKA:104:0.00000000000344:169:66:64#HATPase_c:235:3.56e-29:344:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039063605::NZ_JBCJCP010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120118-121966Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039063605::NZ_JBCJCP010000002.1::G00006Context members
ABCM64_RS01235ABCM64_RS01240
Partner locus tags
ABCM64_RS01235ABCM64_RS01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343001468.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCM64_RS01240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCJCP010000002.1Sequence record reported by the local genomic context database.
Genomic interval120 819-121 966 nt1 148 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 118-121 966 ntGCF_039063605::NZ_JBCJCP010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039063605::NZ_JBCJCP010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCJCP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span120 118-121 966 nt1 849 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 118 nt121 966 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCM64_RS01235GCF_039063605#ABCM64_RS01235
RROmpR
120 118-120 819 nt · Reverse (-)
ABCM64_RS01240GCF_039063605#ABCM64_RS01240
HKClassicCurrent focus
120 819-121 966 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555595#I2E65_RS04890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1731240
Simplified PFAM architecture for HKOC_1731240
PFAM domain coverage: 177 / 469 aa (37.7%)
1 aa469 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-257] | HATPase_c[324-434]
- Domain count: 2
- Matched identifier: HKOC_1731240
- Positioned domains: HisKA 192-257 ; HATPase_c 324-434
Cluster members and taxonomy
Representative gene: GCF_015555595#I2E65_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_039063605
AssemblyASM3906360v1 · Scaffoldhaploid
Genome composition2 238 382 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key