1 HisKA#1
190-249 aa · 60 aa · 14.8% of protein
Raw token
HisKA:190:0.0000000491:249:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCR68_RS15030
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_039031135
ClassHKTypeClassicLength406 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_039031135#ABCR68_RS15030Stable P2CS identifier used across views.
GenomeGCF_039031135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length406 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 406 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa406 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
303-402 aa · 100 aa · 24.6% of protein
Raw token
HATPase_c:303:3.71e-24:402:101:109- Raw architecture: HisKA:190:0.0000000491:249:60:64#HATPase_c:303:3.71e-24:402:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_039031135::NZ_JBCIUQ010000033.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1427-3342Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039031135::NZ_JBCIUQ010000033.1::G00048Context members
ABCR68_RS15025ABCR68_RS15030
Partner locus tags
ABCR68_RS15025ABCR68_RS15030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144362787.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCR68_RS15030Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCIUQ010000033.1Sequence record reported by the local genomic context database.
Genomic interval2 122-3 342 nt1 221 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 427-3 342 ntGCF_039031135::NZ_JBCIUQ010000033.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039031135::NZ_JBCIUQ010000033.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCIUQ010000033.1All displayed genes belong to this local TCS context.
Neighborhood span1 427-3 342 nt1 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 427 nt3 342 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCR68_RS15025GCF_039031135#ABCR68_RS15025
RROmpR
1 427-2 125 nt · Forward (+)
ABCR68_RS15030GCF_039031135#ABCR68_RS15030
HKClassicCurrent focus
2 122-3 342 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027692425#PG422_RS15845Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2392225
Simplified PFAM architecture for HKOC_2392225
PFAM domain coverage: 161 / 406 aa (39.7%)
1 aa406 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-249] | HATPase_c[302-402]
- Domain count: 2
- Matched identifier: HKOC_2392225
- Positioned domains: HisKA 190-249 ; HATPase_c 302-402
Cluster members and taxonomy
Representative gene: GCF_027692425#PG422_RS15845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_039031135
AssemblyASM3903113v1 · Scaffoldhaploid
Genome composition3 430 509 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 43 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key