1 HisKA#1
85-141 aa · 57 aa · 19.2% of protein
Raw token
HisKA:85:0.00000000000225:141:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCR68_RS14675
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_039031135
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_039031135#ABCR68_RS14675Stable P2CS identifier used across views.
GenomeGCF_039031135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 297 aa (49.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-286 aa · 90 aa · 30.3% of protein
Raw token
HATPase_c:197:5.54e-20:286:95:109- Raw architecture: HisKA:85:0.00000000000225:141:57:64#HATPase_c:197:5.54e-20:286:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_039031135::NZ_JBCIUQ010000030.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span22358-23251Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_039031135::NZ_JBCIUQ010000030.1::G00046Context members
ABCR68_RS14675
Partner locus tags
ABCR68_RS14675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343122773.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCR68_RS14675Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCIUQ010000030.1Sequence record reported by the local genomic context database.
Genomic interval22 358-23 251 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 358-23 251 ntGCF_039031135::NZ_JBCIUQ010000030.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_039031135::NZ_JBCIUQ010000030.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCIUQ010000030.1All displayed genes belong to this local TCS context.
Neighborhood span22 358-23 251 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 358 nt23 251 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCR68_RS14675GCF_039031135#ABCR68_RS14675
HKClassicCurrent focus
22 358-23 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039031135#ABCR68_RS14675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2890983
Simplified PFAM architecture for HKOC_2890983
PFAM domain coverage: 143 / 297 aa (48.1%)
1 aa297 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-143] | HATPase_c[197-282]
- Domain count: 2
- Matched identifier: HKOC_2890983
- Positioned domains: HisKA 87-143 ; HATPase_c 197-282
Cluster members and taxonomy
Representative gene: GCF_039031135#ABCR68_RS14675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_039031135
AssemblyASM3903113v1 · Scaffoldhaploid
Genome composition3 430 509 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 43 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key