1 dCache_1#1
42-221 aa · 180 aa · 41.1% of protein
Raw token
dCache_1:42:0.0000037:221:181:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCR68_RS09040
Probable incomplete histidine kinase
Mediterraneibacter gnavus · GCF_039031135
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_039031135#ABCR68_RS09040Stable P2CS identifier used across views.
GenomeGCF_039031135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 ABCR68_RS09040MIST4
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinase
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 438 aa (68.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinaseSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HAMP#2
281-347 aa · 67 aa · 15.3% of protein
Raw token
HAMP:281:0.00000000000563:347:67:693 His_kinase#3
362-415 aa · 54 aa · 12.3% of protein
Raw token
His_kinase:362:1.89e-20:415:54:80- Raw architecture: dCache_1:42:0.0000037:221:181:195#HAMP:281:0.00000000000563:347:67:69#His_kinase:362:1.89e-20:415:54:80
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCR68_RS09040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_039031135
AssemblyASM3903113v1 · Scaffoldhaploid
Genome composition3 430 509 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 94 · HK 43 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key