1 Response_reg#1
4-96 aa · 93 aa · 36.3% of protein
Raw token
Response_reg:4:8.66e-16:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ60_RS14290
Response regulator, FrzZ family
Clostridioides difficile · GCF_038755505
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038755505#ABCQ60_RS14290Stable P2CS identifier used across views.
GenomeGCF_038755505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 256 aa (71.5%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
162-251 aa · 90 aa · 35.2% of protein
Raw token
Response_reg:162:0.000000424:251:90:111- Raw architecture: Response_reg:4:8.66e-16:96:93:111#Response_reg:162:0.000000424:251:90:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038755505::NZ_JBBBMW010000013.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74325-75095Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038755505::NZ_JBBBMW010000013.1::G00047Context members
ABCQ60_RS14290
Partner locus tags
ABCQ60_RS14290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005947715.1Primary protein accession used for annex mappings.
UniProt accessionC0CL03Primary UniProt accession resolved in the annex database.
UniProt IDC0CL03_BLAHSDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ60_RS14290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMW010000013.1Sequence record reported by the local genomic context database.
Genomic interval74 325-75 095 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span74 325-75 095 ntGCF_038755505::NZ_JBBBMW010000013.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038755505::NZ_JBBBMW010000013.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMW010000013.1All displayed genes belong to this local TCS context.
Neighborhood span74 325-75 095 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 325 nt75 095 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCQ60_RS14290GCF_038755505#ABCQ60_RS14290
RRFrzZCurrent focus
74 325-75 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157975#RUMHYD_RS06785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0673149
Simplified PFAM architecture for RROC_0673149
PFAM domain coverage: 99 / 256 aa (38.7%)
1 aa256 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_0673149
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_000157975#RUMHYD_RS06785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038755505
AssemblyASM3875550v1 · Scaffoldhaploid
Genome composition4 166 631 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key