1 HisKA#1
88-145 aa · 58 aa · 19.7% of protein
Raw token
HisKA:88:0.00000000291:145:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCP58_RS18810
Histidine kinase, Classic
Clostridioides difficile · GCF_038754795
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038754795#ABCP58_RS18810Stable P2CS identifier used across views.
GenomeGCF_038754795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 295 aa (48.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
195-280 aa · 86 aa · 29.2% of protein
Raw token
HATPase_c:195:0.00000000000000247:280:91:109- Raw architecture: HisKA:88:0.00000000291:145:58:64#HATPase_c:195:0.00000000000000247:280:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038754795::NZ_JBBBMA010000028.1::G00060
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14060-14947Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038754795::NZ_JBBBMA010000028.1::G00060Context members
ABCP58_RS18810
Partner locus tags
ABCP58_RS18810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074137632.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCP58_RS18810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBMA010000028.1Sequence record reported by the local genomic context database.
Genomic interval14 060-14 947 nt888 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 060-14 947 ntGCF_038754795::NZ_JBBBMA010000028.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038754795::NZ_JBBBMA010000028.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBMA010000028.1All displayed genes belong to this local TCS context.
Neighborhood span14 060-14 947 nt888 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 060 nt14 947 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCP58_RS18810GCF_038754795#ABCP58_RS18810
HKClassicCurrent focus
14 060-14 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314545#E0O41_RS01100Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892347
Simplified PFAM architecture for HKOC_2892347
PFAM domain coverage: 145 / 295 aa (49.2%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-145] | HATPase_c[195-279]
- Domain count: 2
- Matched identifier: HKOC_2892347
- Positioned domains: HisKA 86-145 ; HATPase_c 195-279
Cluster members and taxonomy
Representative gene: GCF_004314545#E0O41_RS01100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038754795
AssemblyASM3875479v1 · Scaffoldhaploid
Genome composition4 248 881 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 111 · HK 53 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key