1 HisKA#1
230-293 aa · 64 aa · 14.0% of protein
Raw token
HisKA:230:0.00000000000155:293:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ88_RS00745
Histidine kinase, Classic
Clostridioides difficile · GCF_038754715
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038754715#ABCQ88_RS00745Stable P2CS identifier used across views.
GenomeGCF_038754715Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 456 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
343-455 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:343:4.6e-22:455:113:109- Raw architecture: HisKA:230:0.00000000000155:293:64:64#HATPase_c:343:4.6e-22:455:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038754715::NZ_JBBBLZ010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159270-161332Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038754715::NZ_JBBBLZ010000001.1::G00005Context members
ABCQ88_RS00745ABCQ88_RS00750
Partner locus tags
ABCQ88_RS00745ABCQ88_RS00750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074048882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ88_RS00745Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval159 270-160 640 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span159 270-161 332 ntGCF_038754715::NZ_JBBBLZ010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038754715::NZ_JBBBLZ010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span159 270-161 332 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 270 nt161 332 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCQ88_RS00745GCF_038754715#ABCQ88_RS00745
HKClassicCurrent focus
159 270-160 640 nt · Reverse (-)
ABCQ88_RS00750GCF_038754715#ABCQ88_RS00750
RROmpR
160 637-161 332 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301405#BGU19_RS07280Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1889970
Simplified PFAM architecture for HKOC_1889970
PFAM domain coverage: 176 / 456 aa (38.6%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[230-293] | HATPase_c[343-454]
- Domain count: 2
- Matched identifier: HKOC_1889970
- Positioned domains: HisKA 230-293 ; HATPase_c 343-454
Cluster members and taxonomy
Representative gene: GCF_002301405#BGU19_RS07280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038754715
AssemblyASM3875471v1 · Scaffoldhaploid
Genome composition4 272 689 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key