1 HisKA#1
246-312 aa · 67 aa · 14.2% of protein
Raw token
HisKA:246:0.000000000000159:312:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCP49_RS06165
Histidine kinase, Classic
Clostridioides difficile · GCF_038754145
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038754145#ABCP49_RS06165Stable P2CS identifier used across views.
GenomeGCF_038754145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 472 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
359-466 aa · 108 aa · 22.9% of protein
Raw token
HATPase_c:359:3.04e-28:466:108:109- Raw architecture: HisKA:246:0.000000000000159:312:67:64#HATPase_c:359:3.04e-28:466:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038754145::NZ_JBBBLK010000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span171270-173382Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038754145::NZ_JBBBLK010000005.1::G00024Context members
ABCP49_RS06165ABCP49_RS06170
Partner locus tags
ABCP49_RS06165ABCP49_RS06170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077708831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCP49_RS06165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLK010000005.1Sequence record reported by the local genomic context database.
Genomic interval171 270-172 688 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span171 270-173 382 ntGCF_038754145::NZ_JBBBLK010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038754145::NZ_JBBBLK010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span171 270-173 382 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
171 270 nt173 382 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCP49_RS06165GCF_038754145#ABCP49_RS06165
HKClassicCurrent focus
171 270-172 688 nt · Reverse (-)
ABCP49_RS06170GCF_038754145#ABCP49_RS06170
RROmpR
172 678-173 382 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS12805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1699087
Simplified PFAM architecture for HKOC_1699087
PFAM domain coverage: 174 / 472 aa (36.9%)
1 aa472 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[246-310] | HATPase_c[359-467]
- Domain count: 2
- Matched identifier: HKOC_1699087
- Positioned domains: HisKA 246-310 ; HATPase_c 359-467
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038754145
AssemblyASM3875414v1 · Scaffoldhaploid
Genome composition4 223 309 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key