1 Response_reg#1
4-110 aa · 107 aa · 45.9% of protein
Raw token
Response_reg:4:1.44e-17:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ59_RS03320
Response regulator LytTR family
Clostridioides difficile · GCF_038754055
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038754055#ABCQ59_RS03320Stable P2CS identifier used across views.
GenomeGCF_038754055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 233 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-225 aa · 89 aa · 38.2% of protein
Raw token
LytTR:137:3.57e-21:225:95:98- Raw architecture: Response_reg:4:1.44e-17:110:110:111#LytTR:137:3.57e-21:225:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038754055::NZ_JBBBLL010000003.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span74204-74905Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038754055::NZ_JBBBLL010000003.1::G00011Context members
ABCQ59_RS03320
Partner locus tags
ABCQ59_RS03320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343100460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ59_RS03320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBLL010000003.1Sequence record reported by the local genomic context database.
Genomic interval74 204-74 905 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 204-74 905 ntGCF_038754055::NZ_JBBBLL010000003.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038754055::NZ_JBBBLL010000003.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBLL010000003.1All displayed genes belong to this local TCS context.
Neighborhood span74 204-74 905 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 204 nt74 905 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCQ59_RS03320GCF_038754055#ABCQ59_RS03320
RRLytTRCurrent focus
74 204-74 905 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038754055#ABCQ59_RS03320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1108616
Simplified PFAM architecture for RROC_1108616
PFAM domain coverage: 196 / 233 aa (84.1%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-111] | LytTR[136-224]
- Domain count: 2
- Matched identifier: RROC_1108616
- Positioned domains: Response_reg 5-111 ; LytTR 136-224
Cluster members and taxonomy
Representative gene: GCF_038754055#ABCQ59_RS03320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038754055
AssemblyASM3875405v1 · Contighaploid
Genome composition3 950 810 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 49 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key