1 HisKA#1
29-97 aa · 69 aa · 27.5% of protein
Raw token
HisKA:29:0.000000000000509:97:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ89_RS01830
Histidine kinase, Classic
Clostridioides difficile · GCF_038752525
ClassHKTypeClassicLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038752525#ABCQ89_RS01830Stable P2CS identifier used across views.
GenomeGCF_038752525Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 251 aa (70.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
144-250 aa · 107 aa · 42.6% of protein
Raw token
HATPase_c:144:3.97e-29:250:108:109- Raw architecture: HisKA:29:0.000000000000509:97:69:64#HATPase_c:144:3.97e-29:250:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038752525::NZ_JBBBKI010000001.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span380701-381456Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038752525::NZ_JBBBKI010000001.1::G00010Context members
ABCQ89_RS01830
Partner locus tags
ABCQ89_RS01830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343117502.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ89_RS01830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBKI010000001.1Sequence record reported by the local genomic context database.
Genomic interval380 701-381 456 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span380 701-381 456 ntGCF_038752525::NZ_JBBBKI010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038752525::NZ_JBBBKI010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBKI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span380 701-381 456 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
380 701 nt381 456 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABCQ89_RS01830GCF_038752525#ABCQ89_RS01830
HKClassicCurrent focus
380 701-381 456 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038752525#ABCQ89_RS01830The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2918883
Simplified PFAM architecture for HKOC_2918883
PFAM domain coverage: 167 / 251 aa (66.5%)
1 aa251 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[29-90] | HATPase_c[146-250]
- Domain count: 2
- Matched identifier: HKOC_2918883
- Positioned domains: HisKA 29-90 ; HATPase_c 146-250
Cluster members and taxonomy
Representative gene: GCF_038752525#ABCQ89_RS01830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038752525
AssemblyASM3875252v1 · Contighaploid
Genome composition4 089 829 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key