1 HisKA#1
119-185 aa · 67 aa · 19.8% of protein
Raw token
HisKA:119:0.0000000000966:185:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABCQ58_RS08590
Histidine kinase, Classic
Clostridioides difficile · GCF_038752205
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038752205#ABCQ58_RS08590Stable P2CS identifier used across views.
GenomeGCF_038752205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 338 aa (49.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-336 aa · 100 aa · 29.6% of protein
Raw token
HATPase_c:237:1.3e-25:336:101:109- Raw architecture: HisKA:119:0.0000000000966:185:67:64#HATPase_c:237:1.3e-25:336:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038752205::NZ_JBBBKA010000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span346844-348528Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_038752205::NZ_JBBBKA010000003.1::G00030Context members
ABCQ58_RS08590ABCQ58_RS08595
Partner locus tags
ABCQ58_RS08590ABCQ58_RS08595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022009175.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABCQ58_RS08590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBBBKA010000003.1Sequence record reported by the local genomic context database.
Genomic interval346 844-347 860 nt1 017 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span346 844-348 528 ntGCF_038752205::NZ_JBBBKA010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038752205::NZ_JBBBKA010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBBKA010000003.1All displayed genes belong to this local TCS context.
Neighborhood span346 844-348 528 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 844 nt348 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABCQ58_RS08590GCF_038752205#ABCQ58_RS08590
HKClassicCurrent focus
346 844-347 860 nt · Reverse (-)
ABCQ58_RS08595GCF_038752205#ABCQ58_RS08595
RROmpR
347 863-348 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038752205#ABCQ58_RS08590The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2843659
Simplified PFAM architecture for HKOC_2843659
PFAM domain coverage: 166 / 338 aa (49.1%)
1 aa338 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-185] | HATPase_c[236-336]
- Domain count: 2
- Matched identifier: HKOC_2843659
- Positioned domains: HisKA 121-185 ; HATPase_c 236-336
Cluster members and taxonomy
Representative gene: GCF_038752205#ABCQ58_RS08590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_038752205
AssemblyASM3875220v1 · Scaffoldhaploid
Genome composition4 287 481 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key