1 HAMP#1
192-258 aa · 67 aa · 13.5% of protein
Raw token
HAMP:192:7.71e-17:258:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8V52_RS20340
Histidine kinase, Classic
Bacillus mycoides · GCF_038024175
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038024175#V8V52_RS20340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 496 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-334 aa · 65 aa · 13.1% of protein
Raw token
HisKA:270:0.000000000000014:334:65:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:2.39e-30:492:110:109- Raw architecture: HAMP:192:7.71e-17:258:67:69#HisKA:270:0.000000000000014:334:65:64#HATPase_c:383:2.39e-30:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038024175::NZ_CP150648.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3993691-3995886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8V52_20340RefSeq proteinWP_088032463.1
Context group ID
GCF_038024175::NZ_CP150648.1::G00046Context members
V8V52_RS20335V8V52_RS20340
Partner locus tags
V8V52_RS20335V8V52_RS20340
Partner old locus tags
V8V52_20335V8V52_20340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088032463.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AAX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AAX3_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8V52_RS20340Primary locus identifier stored in the genes table.
Old locus tagV8V52_20340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP150648.1Sequence record reported by the local genomic context database.
Genomic interval3 994 396-3 995 886 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 993 691-3 995 886 ntGCF_038024175::NZ_CP150648.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038024175::NZ_CP150648.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP150648.1All displayed genes belong to this local TCS context.
Neighborhood span3 993 691-3 995 886 nt2 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 993 691 nt3 995 886 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8V52_RS20335GCF_038024175#V8V52_RS20335
RROmpR
3 993 691-3 994 380 nt · Reverse (-)
V8V52_RS20340GCF_038024175#V8V52_RS20340
HKClassicCurrent focus
3 994 396-3 995 886 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS15480Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1499590
Simplified PFAM architecture for HKOC_1499590
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-258] | HisKA[270-334] | HATPase_c[383-493]
- Domain count: 3
- Matched identifier: HKOC_1499590
- Positioned domains: HAMP 206-258 ; HisKA 270-334 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS15480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_038024175
AssemblyASM3802417v1 · Complete Genomehaploid
Genome composition6 050 948 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 68 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key