1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.00000000000079:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8V52_RS12520
Histidine kinase, Classic
Bacillus mycoides · GCF_038024175
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038024175#V8V52_RS12520Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 418 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-417 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:314:5.77e-22:417:107:109- Raw architecture: HisKA:208:0.00000000000079:271:64:64#HATPase_c:314:5.77e-22:417:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038024175::NZ_CP150648.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2434923-2436179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8V52_12520RefSeq proteinWP_088031855.1
Context group ID
GCF_038024175::NZ_CP150648.1::G00025Context members
V8V52_RS12520
Partner locus tags
V8V52_RS12520
Partner old locus tags
V8V52_12520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088031855.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AHV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AHV0_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8V52_RS12520Primary locus identifier stored in the genes table.
Old locus tagV8V52_12520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP150648.1Sequence record reported by the local genomic context database.
Genomic interval2 434 923-2 436 179 nt1 257 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 434 923-2 436 179 ntGCF_038024175::NZ_CP150648.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038024175::NZ_CP150648.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP150648.1All displayed genes belong to this local TCS context.
Neighborhood span2 434 923-2 436 179 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 434 923 nt2 436 179 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V8V52_RS12520GCF_038024175#V8V52_RS12520
HKClassicCurrent focus
2 434 923-2 436 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS12400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2286187
Simplified PFAM architecture for HKOC_2286187
PFAM domain coverage: 165 / 418 aa (39.5%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-270] | HATPase_c[316-417]
- Domain count: 2
- Matched identifier: HKOC_2286187
- Positioned domains: HisKA 208-270 ; HATPase_c 316-417
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS12400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_038024175
AssemblyASM3802417v1 · Complete Genomehaploid
Genome composition6 050 948 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 68 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key