1 HisKA_3#1
177-240 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:177:1.65e-23:240:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8V52_RS02460
Histidine kinase, Classic
Bacillus mycoides · GCF_038024175
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038024175#V8V52_RS02460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 375 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-366 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:281:0.00000000248:366:104:109- Raw architecture: HisKA_3:177:1.65e-23:240:64:68#HATPase_c:281:0.00000000248:366:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038024175::NZ_CP150648.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span477500-479226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8V52_02460RefSeq proteinWP_088031710.1
Context group ID
GCF_038024175::NZ_CP150648.1::G00007Context members
V8V52_RS02460V8V52_RS02465
Partner locus tags
V8V52_RS02460V8V52_RS02465
Partner old locus tags
V8V52_02460V8V52_02465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088031710.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AHK2Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AHK2_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8V52_RS02460Primary locus identifier stored in the genes table.
Old locus tagV8V52_02460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP150648.1Sequence record reported by the local genomic context database.
Genomic interval477 500-478 627 nt1 128 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span477 500-479 226 ntGCF_038024175::NZ_CP150648.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038024175::NZ_CP150648.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP150648.1All displayed genes belong to this local TCS context.
Neighborhood span477 500-479 226 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
477 500 nt479 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8V52_RS02460GCF_038024175#V8V52_RS02460
HKClassicCurrent focus
477 500-478 627 nt · Forward (+)
V8V52_RS02465GCF_038024175#V8V52_RS02465
RRNarL
478 624-479 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS10820Use this link to inspect the representative gene detail.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2650523
Simplified PFAM architecture for HKOC_2650523
PFAM domain coverage: 261 / 375 aa (69.6%)
1 aa375 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[3-148] | HisKA_3[177-240] | HATPase_c[279-329]
- Domain count: 3
- Matched identifier: HKOC_2650523
- Positioned domains: DesK_N 3-148 ; HisKA_3 177-240 ; HATPase_c 279-329
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS10820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_038024175
AssemblyASM3802417v1 · Complete Genomehaploid
Genome composition6 050 948 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 68 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key