1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:3.47e-28:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N2V83_RS25730
Response regulator, unclassified
Bacillus sp. FSL M7-1431 · GCF_038008405
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_038008405#N2V83_RS25730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 235 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.47e-28:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_038008405::NZ_JBBOZC010000001.1::G00074
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4952879-4953586Genomic interval covered by the local TCS group.
Identifiers
Old locus tagN2V83_25730RefSeq proteinWP_002125132.1
Context group ID
GCF_038008405::NZ_JBBOZC010000001.1::G00074Context members
N2V83_RS25730
Partner locus tags
N2V83_RS25730
Partner old locus tags
N2V83_25730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002125132.1Primary protein accession used for annex mappings.
UniProt accessionA9VTR1Primary UniProt accession resolved in the annex database.
UniProt IDA9VTR1_BACMKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN2V83_RS25730Primary locus identifier stored in the genes table.
Old locus tagN2V83_25730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOZC010000001.1Sequence record reported by the local genomic context database.
Genomic interval4 952 879-4 953 586 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 952 879-4 953 586 ntGCF_038008405::NZ_JBBOZC010000001.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038008405::NZ_JBBOZC010000001.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOZC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 952 879-4 953 586 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 952 879 nt4 953 586 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
N2V83_RS25730GCF_038008405#N2V83_RS25730
RRunclassifiedCurrent focus
4 952 879-4 953 586 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS02850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1016502
Simplified PFAM architecture for RROC_1016502
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1016502
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS02850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 978 219 · GCF_038008405
AssemblyASM3800840v1 · Contighaploid
Genome composition5 609 717 bp · 35,5% GCBacillus sp. FSL M7-1431
Signal transduction countsGenes 142 · HK 77 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key