1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.00000000000267:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N2V83_RS02705
Histidine kinase, Classic
Bacillus sp. FSL M7-1431 · GCF_038008405
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038008405#N2V83_RS02705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 476 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-308 aa · 62 aa · 13.0% of protein
Raw token
HisKA:247:0.000000000000568:308:62:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.18e-21:464:109:109- Raw architecture: HAMP:167:0.00000000000267:235:69:69#HisKA:247:0.000000000000568:308:62:64#HATPase_c:356:1.18e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038008405::NZ_JBBOZC010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span506590-508703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagN2V83_02705RefSeq proteinWP_340975860.1
Context group ID
GCF_038008405::NZ_JBBOZC010000001.1::G00009Context members
N2V83_RS02700N2V83_RS02705
Partner locus tags
N2V83_RS02700N2V83_RS02705
Partner old locus tags
N2V83_02700N2V83_02705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_340975860.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN2V83_RS02705Primary locus identifier stored in the genes table.
Old locus tagN2V83_02705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOZC010000001.1Sequence record reported by the local genomic context database.
Genomic interval507 273-508 703 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span506 590-508 703 ntGCF_038008405::NZ_JBBOZC010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038008405::NZ_JBBOZC010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOZC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span506 590-508 703 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
506 590 nt508 703 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
N2V83_RS02700GCF_038008405#N2V83_RS02700
RROmpR
506 590-507 261 nt · Forward (+)
N2V83_RS02705GCF_038008405#N2V83_RS02705
HKClassicCurrent focus
507 273-508 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038008405#N2V83_RS02705The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1661768
Simplified PFAM architecture for HKOC_1661768
PFAM domain coverage: 217 / 476 aa (45.6%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1661768
- Positioned domains: HAMP 184-234 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_038008405#N2V83_RS02705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 978 219 · GCF_038008405
AssemblyASM3800840v1 · Contighaploid
Genome composition5 609 717 bp · 35,5% GCBacillus sp. FSL M7-1431
Signal transduction countsGenes 142 · HK 77 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key