1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000174:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSS97_RS13540
Histidine kinase, Classic
Bacillus sp. FSL R12-0074 · GCF_038005725
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038005725#NSS97_RS13540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 490 aa (46.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000405:323:66:643 HATPase_c#3
369-460 aa · 92 aa · 18.8% of protein
Raw token
HATPase_c:369:1.12e-16:460:92:109- Raw architecture: HAMP:164:0.00000000000000174:233:70:69#HisKA:258:0.0000000000000405:323:66:64#HATPase_c:369:1.12e-16:460:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038005725::NZ_JBBOTR010000001.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2601569-2603699Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSS97_13535RefSeq proteinWP_107886875.1
Context group ID
GCF_038005725::NZ_JBBOTR010000001.1::G00034Context members
NSS97_RS13540NSS97_RS13545
Partner locus tags
NSS97_RS13540NSS97_RS13545
Partner old locus tags
NSS97_13535NSS97_13540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107886875.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSS97_RS13540Primary locus identifier stored in the genes table.
Old locus tagNSS97_13535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOTR010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 601 569-2 603 041 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 601 569-2 603 699 ntGCF_038005725::NZ_JBBOTR010000001.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038005725::NZ_JBBOTR010000001.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOTR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 601 569-2 603 699 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 601 569 nt2 603 699 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSS97_RS13540GCF_038005725#NSS97_RS13540
HKClassicCurrent focus
2 601 569-2 603 041 nt · Reverse (-)
NSS97_RS13545GCF_038005725#NSS97_RS13545
RROmpR
2 603 034-2 603 699 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038005725#NSS97_RS13540The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1539025
Simplified PFAM architecture for HKOC_1539025
PFAM domain coverage: 218 / 490 aa (44.5%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-469]
- Domain count: 3
- Matched identifier: HKOC_1539025
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-469
Cluster members and taxonomy
Representative gene: GCF_038005725#NSS97_RS13540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 954 664 · GCF_038005725
AssemblyASM3800572v1 · Contighaploid
Genome composition5 833 677 bp · 35,5% GCBacillus sp. FSL R12-0074
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key