1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:4e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MHH59_RS15635
Response regulator OmpR family
Bacillus sp. FSL E2-0195 · GCF_038003645
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038003645#MHH59_RS15635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 228 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:151:9.43e-29:224:77:77- Raw architecture: Response_reg:5:4e-36:114:111:111#Trans_reg_C:151:9.43e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038003645::NZ_JBBOPN010000001.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3027978-3030445Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMHH59_15635RefSeq proteinWP_002128032.1
Context group ID
GCF_038003645::NZ_JBBOPN010000001.1::G00046Context members
MHH59_RS15630MHH59_RS15635
Partner locus tags
MHH59_RS15630MHH59_RS15635
Partner old locus tags
MHH59_15630MHH59_15635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128032.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GQD9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GQD9_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMHH59_RS15635Primary locus identifier stored in the genes table.
Old locus tagMHH59_15635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOPN010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 029 759-3 030 445 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 027 978-3 030 445 ntGCF_038003645::NZ_JBBOPN010000001.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038003645::NZ_JBBOPN010000001.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOPN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 027 978-3 030 445 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 027 978 nt3 030 445 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MHH59_RS15630GCF_038003645#MHH59_RS15630
HKClassic
3 027 978-3 029 762 nt · Reverse (-)
MHH59_RS15635GCF_038003645#MHH59_RS15635
RROmpRCurrent focus
3 029 759-3 030 445 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS13315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301500
Simplified PFAM architecture for RROC_1301500
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1301500
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-224 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS13315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 921 363 · GCF_038003645
AssemblyASM3800364v1 · Contighaploid
Genome composition6 001 025 bp · 35,5% GCBacillus sp. FSL E2-0195
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key