1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:9.15e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MHH59_RS03285
Response regulator OmpR family
Bacillus sp. FSL E2-0195 · GCF_038003645
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_038003645#MHH59_RS03285Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 225 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 34.7% of protein
Raw token
Trans_reg_C:143:1.07e-28:220:78:77- Raw architecture: Response_reg:4:9.15e-37:113:111:111#Trans_reg_C:143:1.07e-28:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_038003645::NZ_JBBOPN010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span653983-656042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMHH59_03285RefSeq proteinWP_340850824.1
Context group ID
GCF_038003645::NZ_JBBOPN010000001.1::G00011Context members
MHH59_RS03280MHH59_RS03285
Partner locus tags
MHH59_RS03280MHH59_RS03285
Partner old locus tags
MHH59_03280MHH59_03285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_340850824.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMHH59_RS03285Primary locus identifier stored in the genes table.
Old locus tagMHH59_03285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBBOPN010000001.1Sequence record reported by the local genomic context database.
Genomic interval655 365-656 042 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span653 983-656 042 ntGCF_038003645::NZ_JBBOPN010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_038003645::NZ_JBBOPN010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBBOPN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span653 983-656 042 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
653 983 nt656 042 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MHH59_RS03280GCF_038003645#MHH59_RS03280
HKClassic
653 983-655 353 nt · Reverse (-)
MHH59_RS03285GCF_038003645#MHH59_RS03285
RROmpRCurrent focus
655 365-656 042 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_038003645#MHH59_RS03285The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1509933
Simplified PFAM architecture for RROC_1509933
PFAM domain coverage: 186 / 225 aa (82.7%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1509933
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_038003645#MHH59_RS03285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 921 363 · GCF_038003645
AssemblyASM3800364v1 · Contighaploid
Genome composition6 001 025 bp · 35,5% GCBacillus sp. FSL E2-0195
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key