1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.57e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAC705_RS08575
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_037967005
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037967005#AAC705_RS08575Stable P2CS identifier used across views.
GenomeGCF_037967005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:150:2.3e-29:224:75:77- Raw architecture: Response_reg:4:1.57e-30:113:111:111#Trans_reg_C:150:2.3e-29:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037967005::NZ_JAXCVW010000017.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55424-57156Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_037967005::NZ_JAXCVW010000017.1::G00010Context members
AAC705_RS08570AAC705_RS08575
Partner locus tags
AAC705_RS08570AAC705_RS08575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_340480826.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAC705_RS08575Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXCVW010000017.1Sequence record reported by the local genomic context database.
Genomic interval56 470-57 156 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 424-57 156 ntGCF_037967005::NZ_JAXCVW010000017.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037967005::NZ_JAXCVW010000017.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXCVW010000017.1All displayed genes belong to this local TCS context.
Neighborhood span55 424-57 156 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 424 nt57 156 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AAC705_RS08570GCF_037967005#AAC705_RS08570
HKClassic
55 424-56 461 nt · Reverse (-)
AAC705_RS08575GCF_037967005#AAC705_RS08575
RROmpRCurrent focus
56 470-57 156 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037966825#AAC702_RS10800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1338825
Simplified PFAM architecture for RROC_1338825
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1338825
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_037966825#AAC702_RS10800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_037967005
AssemblyASM3796700v1 · Contighaploid
Genome composition2 751 478 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key