1 Response_reg#1
16-123 aa · 108 aa · 48.6% of protein
Raw token
Response_reg:16:1.79e-16:123:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AAC705_RS04815
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_037967005
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_037967005#AAC705_RS04815Stable P2CS identifier used across views.
GenomeGCF_037967005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 222 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
162-215 aa · 54 aa · 24.3% of protein
Raw token
HTH_LUXR:162:0.000000000523:215:54:58- Raw architecture: Response_reg:16:1.79e-16:123:108:111#HTH_LUXR:162:0.000000000523:215:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_037967005::NZ_JAXCVW010000008.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28345-29013Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_037967005::NZ_JAXCVW010000008.1::G00024Context members
AAC705_RS04815
Partner locus tags
AAC705_RS04815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158309821.1Primary protein accession used for annex mappings.
UniProt accessionA0A564S242Primary UniProt accession resolved in the annex database.
UniProt IDA0A564S242_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAAC705_RS04815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXCVW010000008.1Sequence record reported by the local genomic context database.
Genomic interval28 345-29 013 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 345-29 013 ntGCF_037967005::NZ_JAXCVW010000008.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037967005::NZ_JAXCVW010000008.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXCVW010000008.1All displayed genes belong to this local TCS context.
Neighborhood span28 345-29 013 nt669 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 345 nt29 013 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AAC705_RS04815GCF_037967005#AAC705_RS04815
RRNarLCurrent focus
28 345-29 013 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS13780Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637418
Simplified PFAM architecture for RROC_1637418
PFAM domain coverage: 161 / 222 aa (72.5%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[16-122] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1637418
- Positioned domains: Response_reg 16-122 ; Response_reg 16-122 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS13780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_037967005
AssemblyASM3796700v1 · Contighaploid
Genome composition2 751 478 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 13 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key