1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:8.99e-27:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WIS11_RS13490
Response regulator OmpR family
Clostridioides difficile · GCF_037941895
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_037941895#WIS11_RS13490Stable P2CS identifier used across views.
GenomeGCF_037941895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-217 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:142:1.45e-21:217:77:77- Raw architecture: Response_reg:4:8.99e-27:109:110:111#Trans_reg_C:142:1.45e-21:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_037941895::NZ_CP149765.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2925973-2926635Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWIS11_13490RefSeq proteinWP_339072739.1
Context group ID
GCF_037941895::NZ_CP149765.1::G00047Context members
WIS11_RS13490
Partner locus tags
WIS11_RS13490
Partner old locus tags
WIS11_13490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_339072739.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWIS11_RS13490Primary locus identifier stored in the genes table.
Old locus tagWIS11_13490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP149765.1Sequence record reported by the local genomic context database.
Genomic interval2 925 973-2 926 635 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 925 973-2 926 635 ntGCF_037941895::NZ_CP149765.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037941895::NZ_CP149765.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP149765.1All displayed genes belong to this local TCS context.
Neighborhood span2 925 973-2 926 635 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 925 973 nt2 926 635 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WIS11_RS13490GCF_037941895#WIS11_RS13490
RROmpRCurrent focus
2 925 973-2 926 635 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037915205#WIR95_RS12340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1750996
Simplified PFAM architecture for RROC_1750996
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[143-217]
- Domain count: 2
- Matched identifier: RROC_1750996
- Positioned domains: Response_reg 4-109 ; Trans_reg_C 143-217
Cluster members and taxonomy
Representative gene: GCF_037915205#WIR95_RS12340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_037941895
AssemblyASM3794189v1 · Complete Genomehaploid
Genome composition4 129 130 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 52 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key