1 Response_reg#1
5-96 aa · 92 aa · 93.9% of protein
Raw token
Response_reg:5:8.55e-18:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WIS01_RS16470
Response regulator, CheY family
Clostridioides difficile · GCF_037922005
ClassRRTypeCheYLength98 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_037922005#WIS01_RS16470Stable P2CS identifier used across views.
GenomeGCF_037922005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length98 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage92 / 98 aa (93.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa98 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.55e-18:96:93:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_037922005::NZ_CP149706.1::G00056
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3556456-3559949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWIS01_16470RefSeq proteinWP_235667467.1
Context group ID
GCF_037922005::NZ_CP149706.1::G00056Context members
WIS01_RS16455WIS01_RS16460WIS01_RS16470
Partner locus tags
WIS01_RS16455WIS01_RS16460WIS01_RS16470
Partner old locus tags
WIS01_16455WIS01_16460WIS01_16470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235667467.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWIS01_RS16470Primary locus identifier stored in the genes table.
Old locus tagWIS01_16470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP149706.1Sequence record reported by the local genomic context database.
Genomic interval3 559 653-3 559 949 nt297 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 556 456-3 559 949 ntGCF_037922005::NZ_CP149706.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037922005::NZ_CP149706.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP149706.1All displayed genes belong to this local TCS context.
Neighborhood span3 556 456-3 559 949 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 556 456 nt3 559 949 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
WIS01_RS16455GCF_037922005#WIS01_RS16455
RROmpR
3 556 456-3 557 136 nt · Reverse (-)
WIS01_RS16460GCF_037922005#WIS01_RS16460
HKClassic
3 557 186-3 559 201 nt · Reverse (-)
WIS01_RS16470GCF_037922005#WIS01_RS16470
RRCheYCurrent focus
3 559 653-3 559 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314505#E0O34_RS19720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472219
Simplified PFAM architecture for RROC_2472219
PFAM domain coverage: 90 / 98 aa (91.8%)
1 aa98 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-94]
- Domain count: 1
- Matched identifier: RROC_2472219
- Positioned domains: Response_reg 5-94 ; Response_reg 5-94
Cluster members and taxonomy
Representative gene: GCF_004314505#E0O34_RS19720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_037922005
AssemblyASM3792200v1 · Complete Genomehaploid
Genome composition4 160 342 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 47 · RR 53CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key