1 HisKA#1
118-178 aa · 61 aa · 18.3% of protein
Raw token
HisKA:118:0.00000731:178:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
VSK95_RS05640
Histidine kinase, Classic
Clostridioides difficile · GCF_037448875
ClassHKTypeClassicLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037448875#VSK95_RS05640Stable P2CS identifier used across views.
GenomeGCF_037448875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 334 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
224-331 aa · 108 aa · 32.3% of protein
Raw token
HATPase_c:224:2.69e-25:331:108:109- Raw architecture: HisKA:118:0.00000731:178:63:64#HATPase_c:224:2.69e-25:331:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037448875::NZ_JAYLWF010000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span525156-526858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagVSK95_05645RefSeq proteinWP_284939035.1
Context group ID
GCF_037448875::NZ_JAYLWF010000002.1::G00015Context members
VSK95_RS05640VSK95_RS05645
Partner locus tags
VSK95_RS05640VSK95_RS05645
Partner old locus tags
VSK95_05645VSK95_05650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284939035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagVSK95_RS05640Primary locus identifier stored in the genes table.
Old locus tagVSK95_05645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAYLWF010000002.1Sequence record reported by the local genomic context database.
Genomic interval525 156-526 160 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span525 156-526 858 ntGCF_037448875::NZ_JAYLWF010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037448875::NZ_JAYLWF010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAYLWF010000002.1All displayed genes belong to this local TCS context.
Neighborhood span525 156-526 858 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
525 156 nt526 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
VSK95_RS05640GCF_037448875#VSK95_RS05640
HKClassicCurrent focus
525 156-526 160 nt · Reverse (-)
VSK95_RS05645GCF_037448875#VSK95_RS05645
RROmpR
526 184-526 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251765#QQP04_RS15715Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2850884
Simplified PFAM architecture for HKOC_2850884
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2850884
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_030251765#QQP04_RS15715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_037448875
AssemblyASM3744887v1 · Contighaploid
Genome composition3 996 796 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key