1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:1.59e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V7038_RS02600
Response regulator NarL family
Bacillus sp. JJ783 · GCF_036963225
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036963225#V7038_RS02600Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:3.6e-25:203:55:58- Raw architecture: Response_reg:4:1.59e-32:116:113:111#HTH_LUXR:149:3.6e-25:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036963225::NZ_JBALMG010000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18054-20526Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV7038_02600RefSeq proteinWP_088079530.1
Context group ID
GCF_036963225::NZ_JBALMG010000010.1::G00005Context members
V7038_RS02595V7038_RS02600
Partner locus tags
V7038_RS02595V7038_RS02600
Partner old locus tags
V7038_02595V7038_02600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088079530.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV7038_RS02600Primary locus identifier stored in the genes table.
Old locus tagV7038_02600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBALMG010000010.1Sequence record reported by the local genomic context database.
Genomic interval19 888-20 526 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 054-20 526 ntGCF_036963225::NZ_JBALMG010000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036963225::NZ_JBALMG010000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBALMG010000010.1All displayed genes belong to this local TCS context.
Neighborhood span18 054-20 526 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 054 nt20 526 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V7038_RS02595GCF_036963225#V7038_RS02595
HKClassic
18 054-19 913 nt · Forward (+)
V7038_RS02600GCF_036963225#V7038_RS02600
RRNarLCurrent focus
19 888-20 526 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330435#E0M25_RS18565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1990985
Simplified PFAM architecture for RROC_1990985
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1990985
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_004330435#E0M25_RS18565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 122 974 · GCF_036963225
AssemblyASM3696322v1 · Scaffoldhaploid
Genome composition5 540 722 bp · 35,0% GCBacillus sp. JJ783
Signal transduction countsGenes 110 · HK 60 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key