1 HAMP#1
10-61 aa · 52 aa · 17.5% of protein
Raw token
HAMP:10:0.0000000412:61:52:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
VH742_RS06730
Histidine kinase, Classic
Clostridioides difficile · GCF_036861275
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036861275#VH742_RS06730Stable P2CS identifier used across views.
GenomeGCF_036861275Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 297 aa (75.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation3 items
2 HisKA#2
73-138 aa · 66 aa · 22.2% of protein
Raw token
HisKA:73:0.00000000679:138:66:643 HATPase_c#3
188-294 aa · 107 aa · 36.0% of protein
Raw token
HATPase_c:188:2.46e-27:294:107:109- Raw architecture: HAMP:10:0.0000000412:61:52:69#HisKA:73:0.00000000679:138:66:64#HATPase_c:188:2.46e-27:294:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036861275::NZ_JAYJMP010000003.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span238907-239800Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036861275::NZ_JAYJMP010000003.1::G00033Context members
VH742_RS06730
Partner locus tags
VH742_RS06730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_333953538.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagVH742_RS06730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAYJMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval238 907-239 800 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span238 907-239 800 ntGCF_036861275::NZ_JAYJMP010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036861275::NZ_JAYJMP010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAYJMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span238 907-239 800 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 907 nt239 800 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
VH742_RS06730GCF_036861275#VH742_RS06730
HKClassicCurrent focus
238 907-239 800 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036861275#VH742_RS06730The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2890956
Simplified PFAM architecture for HKOC_2890956
PFAM domain coverage: 223 / 297 aa (75.1%)
1 aa297 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[11-61] | HisKA[74-138] | HATPase_c[188-294]
- Domain count: 3
- Matched identifier: HKOC_2890956
- Positioned domains: HAMP 11-61 ; HisKA 74-138 ; HATPase_c 188-294
Cluster members and taxonomy
Representative gene: GCF_036861275#VH742_RS06730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036861275
AssemblyASM3686127v1 · Contighaploid
Genome composition4 012 729 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 42 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key