1 Response_reg#1
2-91 aa · 90 aa · 40.4% of protein
Raw token
Response_reg:2:4.57e-22:91:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB33_RS17105
Response regulator OmpR family
Clostridioides difficile · GCF_036699115
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036699115#LFB33_RS17105Stable P2CS identifier used across views.
GenomeGCF_036699115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 223 aa (74.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-218 aa · 77 aa · 34.5% of protein
Raw token
Trans_reg_C:142:6.19e-33:218:77:77- Raw architecture: Response_reg:2:4.57e-22:91:91:111#Trans_reg_C:142:6.19e-33:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036699115::NZ_JAJBYR010000049.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13018-15096Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036699115::NZ_JAJBYR010000049.1::G00051Context members
LFB33_RS17100LFB33_RS17105
Partner locus tags
LFB33_RS17100LFB33_RS17105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_332942353.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB33_RS17105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBYR010000049.1Sequence record reported by the local genomic context database.
Genomic interval14 425-15 096 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 018-15 096 ntGCF_036699115::NZ_JAJBYR010000049.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036699115::NZ_JAJBYR010000049.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBYR010000049.1All displayed genes belong to this local TCS context.
Neighborhood span13 018-15 096 nt2 079 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 018 nt15 096 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFB33_RS17100GCF_036699115#LFB33_RS17100
HKClassic
13 018-14 421 nt · Reverse (-)
LFB33_RS17105GCF_036699115#LFB33_RS17105
RROmpRCurrent focus
14 425-15 096 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS09150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0863766
Simplified PFAM architecture for RROC_0863766
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0863766
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS09150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036699115
AssemblyASM3669911v1 · Contighaploid
Genome composition4 217 682 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key