1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:2.03e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB33_RS00090
Response regulator OmpR family
Clostridioides difficile · GCF_036699115
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036699115#LFB33_RS00090Stable P2CS identifier used across views.
GenomeGCF_036699115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:145:1.88e-20:219:76:77- Raw architecture: Response_reg:3:2.03e-24:112:111:111#Trans_reg_C:145:1.88e-20:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036699115::NZ_JAJBYR010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14460-15119Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036699115::NZ_JAJBYR010000001.1::G00001Context members
LFB33_RS00090
Partner locus tags
LFB33_RS00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422066.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB33_RS00090Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBYR010000001.1Sequence record reported by the local genomic context database.
Genomic interval14 460-15 119 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 460-15 119 ntGCF_036699115::NZ_JAJBYR010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036699115::NZ_JAJBYR010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBYR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span14 460-15 119 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 460 nt15 119 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LFB33_RS00090GCF_036699115#LFB33_RS00090
RROmpRCurrent focus
14 460-15 119 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS15490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1769353
Simplified PFAM architecture for RROC_1769353
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1769353
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS15490
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 65 total members. Page 1 / 2.
GCF_000451765#QSM_RS15490 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036699115
AssemblyASM3669911v1 · Contighaploid
Genome composition4 217 682 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key