1 HisKA#1
182-240 aa · 59 aa · 15.0% of protein
Raw token
HisKA:182:0.0000000000000133:240:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LFB18_RS10495
Histidine kinase, Classic
Clostridioides difficile · GCF_036698935
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036698935#LFB18_RS10495Stable P2CS identifier used across views.
GenomeGCF_036698935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 393 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-391 aa · 99 aa · 25.2% of protein
Raw token
HATPase_c:293:1.11e-18:391:100:109- Raw architecture: HisKA:182:0.0000000000000133:240:59:64#HATPase_c:293:1.11e-18:391:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036698935::NZ_JAJBYG010000006.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100106-101949Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_036698935::NZ_JAJBYG010000006.1::G00039Context members
LFB18_RS10490LFB18_RS10495
Partner locus tags
LFB18_RS10490LFB18_RS10495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLFB18_RS10495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJBYG010000006.1Sequence record reported by the local genomic context database.
Genomic interval100 768-101 949 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 106-101 949 ntGCF_036698935::NZ_JAJBYG010000006.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036698935::NZ_JAJBYG010000006.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBYG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span100 106-101 949 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 106 nt101 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LFB18_RS10490GCF_036698935#LFB18_RS10490
RROmpR
100 106-100 768 nt · Forward (+)
LFB18_RS10495GCF_036698935#LFB18_RS10495
HKClassicCurrent focus
100 768-101 949 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS15995Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503595
Simplified PFAM architecture for HKOC_2503595
PFAM domain coverage: 162 / 393 aa (41.2%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[179-240] | HATPase_c[292-391]
- Domain count: 2
- Matched identifier: HKOC_2503595
- Positioned domains: HisKA 179-240 ; HATPase_c 292-391
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS15995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_036698935
AssemblyASM3669893v1 · Contighaploid
Genome composition4 242 413 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key